Package: NGSToolKit
Type: Package
Title: RNA-Seq Analysis and Genome Visualization Shiny Platform
Version: 0.1.0
Authors@R: c(
    person("Sona", "Charles", email = "sonacharlesicar@gmail.com", role = c("aut", "cre")),
    person("Febin T", "Nabeel", email = "nabeelfebin@gmail.com", role = "aut")
  )
Author: Sona Charles [aut, cre], Febin T Nabeel [aut]
Maintainer: Sona Charles <sonacharlesicar@gmail.com>
Description: Interactive Shiny web application for comprehensive
        RNA-Seq data analysis, quality control, differential expression
        analysis with 'DESeq2', dimensionality reduction (PCA, t-SNE,
        UMAP), clustering, and integrated 'JBrowse 2' genome
        visualization.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0.0)
Imports: shiny (>= 1.7.0), shinydashboard (>= 0.7.0), shinyjs (>=
        2.1.0), shinycssloaders (>= 1.0.0), DT (>= 0.20), ggplot2 (>=
        3.3.0), DESeq2, SummarizedExperiment, uwot, Rtsne, pheatmap,
        reshape2, Rsamtools, tools, jsonlite, utils, stats, graphics,
        grDevices
Additional_repositories: https://bioconductor.org/packages/3.19/bioc
URL: https://github.com/bigfacilityiisr/NGS-Tool-Kit
BugReports: https://github.com/bigfacilityiisr/NGS-Tool-Kit/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libuv1-dev xz-utils zlib1g-dev
Repository: https://bigfacilityiisr.r-universe.dev
Date/Publication: 2026-08-01 03:33:40 UTC
RemoteUrl: https://github.com/bigfacilityiisr/ngs-tool-kit
RemoteRef: HEAD
RemoteSha: 2340308d76e98727cfa4832bfb7836ce8138b0d4
Packaged: 2026-10-14 08:03:42 UTC; root