Package: NGSToolKit 0.1.0

Sona Charles

NGSToolKit: RNA-Seq Analysis and Genome Visualization Shiny Platform

Interactive Shiny web application for comprehensive RNA-Seq data analysis, quality control, differential expression analysis with 'DESeq2', dimensionality reduction (PCA, t-SNE, UMAP), clustering, and integrated 'JBrowse 2' genome visualization.

Authors:Sona Charles [aut, cre], Febin T Nabeel [aut]

NGSToolKit_0.1.0.tar.gz
NGSToolKit_0.1.0.zip(r-4.7-any)NGSToolKit_0.1.0.zip(r-4.6-any)NGSToolKit_0.1.0.zip(r-4.5-any)
NGSToolKit_0.1.0.tgz(r-4.6-any)NGSToolKit_0.1.0.tgz(r-4.5-any)
NGSToolKit_0.1.0.tar.gz(r-4.7-any)NGSToolKit_0.1.0.tar.gz(r-4.6-any)
NGSToolKit_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
NGSToolKit/json (API)

# Install 'NGSToolKit' in R:

install.packages('NGSToolKit', repos = c('https://bigfacilityiisr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bigfacilityiisr/ngs-tool-kit/issues

On CRAN:

2.70 score 702 downloads 3 exports 103 dependencies

Last updated from:2340308d76. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	278
source / vignettes	OK	347
linux-release	OK	258
macos-release	OK	359
macos-oldrel	OK	354
windows-devel	OK	251
windows-release	OK	250
windows-oldrel	OK	240
wasm-release	OK	152